DNA Binding Motif

						

			
Accessions: MA0143.1 (JASPAR 2024)

			
Names: Sox2
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 15
Consensus: cywTTGTyaTgcaaA
Weblogo: 
PSSM: P0      A      C      G      T
01     27    444     89    107      c
02     20    453     22    174      y
03    327      7      4    331      w
04      2     10      7    650      T
05     14      1      6    648      T
06     38     83    529     19      G
07     85      4      9    570      T
08     64    194     77    333      y
09    408    124     38     96      a
10     26     39     26    575      T
11     27     77    444    117      g
12     32    422     84    127      c
13    426     41     36    161      a
14    366     67    157     74      a
15    485     60     61     58      A
Type: Heterodimer
Binding TFs: P48432 (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
P48432
Binding Sites: MA0143.1.1
MA0143.1.10
MA0143.1.11
MA0143.1.12
MA0143.1.13
MA0143.1.14
MA0143.1.15
MA0143.1.16
MA0143.1.17
MA0143.1.18
MA0143.1.19
MA0143.1.2
MA0143.1.20
MA0143.1.3
MA0143.1.4
MA0143.1.5
MA0143.1.6
MA0143.1.7
MA0143.1.8
MA0143.1.9
			
Publications: Chen X, Xu H, Yuan P, Fang F, Huss M, Vega V.B, Wong E, Orlov Y.L, Zhang W, Jiang J, Loh Y.H, Yeo H.C, Yeo Z.X, Narang V, Govindarajan K.R, Leong B, Shahab A, Ruan Y, Bourque G, Sung W.K, Clarke N.D, Wei C.L, Ng H.H. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133:1106-17 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.