DNA Binding Motif

						

			
Accessions: 5kea_A (3D-footprint 20231221)

			
Names: Krueppel-like factor 4
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: mouse Klf4 ZnF1-3 (E446D) and CpG/CpG sequence DNA complex structure: Form I
Length: 9
Consensus: smCACGCCY
Weblogo: 
PSSM: P0      A      C      G      T
01      8     26     43     19      s
02     26     43     19      8      m
03      0     96      0      0      C
04     96      0      0      0      A
05      0     96      0      0      C
06      0      0     96      0      G
07      0     96      0      0      C
08      0     96      0      0      C
09      1     69      0     26      Y
Binding TFs: 5kea_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 5kea_B
5kea_C
			
Publications: Hashimoto H, Wang D, Steves AN, Jin P, Blumenthal RM, Zhang X, Cheng X. Distinctive Klf4 mutants determine preference for DNA methylation status. Nucleic Acids Res 44:10177-10185 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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