DNA Binding Motif
| Accessions: | UP00289A_1 (UniPROBE 20160601) |
| Names: | Hypothetical 141.5 kDa zinc finger protein in TUB1-CPR3 intergenic region, Yml081w |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 21 |
| Consensus: | ryrwryTACCCCGCAyhwrys |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.31 0.17 0.28 0.23 r 02 0.16 0.38 0.07 0.39 y 03 0.25 0.10 0.51 0.14 r 04 0.29 0.18 0.16 0.37 w 05 0.47 0.12 0.32 0.09 r 06 0.23 0.35 0.11 0.31 y 07 0.13 0.11 0.07 0.69 T 08 0.79 0.08 0.07 0.06 A 09 0.04 0.96 0 0 C 10 0 0.97 0 0.03 C 11 0 0.99 0 0 C 12 0 0.99 0 0 C 13 0.11 0 0.80 0.08 G 14 0 0.99 0 0 C 15 0.69 0.08 0.01 0.22 A 16 0.20 0.33 0.16 0.31 y 17 0.28 0.27 0.08 0.36 h 18 0.28 0.14 0.21 0.38 w 19 0.32 0.16 0.33 0.18 r 20 0.21 0.27 0.22 0.30 y 21 0.09 0.32 0.35 0.24 s |
| Binding TFs: | UP00289A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | AAGCGGGG ACCCCACA ACCCCACT ACCCCGCA ACCCCGCC ACCCCGCT ATGCGGGG CACCCCGC CCCCACAC CCCCACTC CCCCCGCA CCCCGCAA CCCCGCAC CCCCGCAG CCCCGCTC CCCCTCAC CCCCTCTC GCCCCGCA GCGGGGTA AGCGGGGA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.