DNA Binding Motif

						

			
Accessions: UP00320A_1 (UniPROBE 20160601)

			
Names: Flocculation suppression protein, Sfl1, SFL1 protein, YOR140W, YOR3339W
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 21
Consensus: wmrmraAtmGAAGaaawawww
Weblogo: 
PSSM: P0      A      C      G      T
01   0.27   0.18   0.13   0.41      w
02   0.37   0.26   0.12   0.24      m
03   0.28   0.24   0.33   0.14      r
04   0.38   0.26   0.12   0.24      m
05   0.31   0.10   0.35   0.24      r
06   0.37   0.22   0.20   0.21      a
07   0.73   0.03   0.12   0.12      A
08   0.13   0.18   0.11   0.59      t
09   0.51   0.26   0.23   0.01      m
10   0.02   0.01   0.96   0.01      G
11   0.96   0.02   0.01   0.02      A
12   0.96   0.01   0.02   0.01      A
13   0.02   0.05   0.81   0.12      G
14   0.62   0.13   0.22   0.04      a
15   0.60   0.13   0.04   0.23      a
16   0.54   0.22   0.05   0.19      a
17   0.26   0.16   0.15   0.44      w
18   0.49   0.10   0.22   0.19      a
19   0.43   0.07   0.10   0.40      w
20   0.37   0.12   0.15   0.36      w
21   0.41   0.12   0.07   0.40      w
Binding TFs: UP00320A (HSF-type DNA-binding)
Binding Sites: AAGAAGAA
AATAGAAG
AATCGAAG
AGAAGAAA
AGAAGAAG
AGAAGGAA
ATAGAAGA
ATAGAAGC
ATAGAAGG
ATCGAAGA
ATTTCTTC
CGTAGAAG
GAAGCTTC
GAAGGAAA
GGAAGAAA
TAGAAGAA
TGGAAGAA
CGAAGAAA
GCGAAGAA
TCCTTCGA
			
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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