DNA Binding Motif

						

			
Accessions: SOX6_TBX21_2 (HumanTF2 1.0)

			
Names: SOX6_TBX21
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 21
Consensus: rgGTGtkrwwdwdrACAATrg
Weblogo: 
PSSM: P0      A      C      G      T
01    544    108    305    233      r
02    284    219    565    150      g
03      8    131    849    164      G
04      8    205     22    849      T
05     28      4    849     20      G
06    274    330    188    849      t
07     98    163    269    319      k
08    431    116    213     89      r
09    231    184    208    227      w
10    234    189    200    226      w
11    214    150    236    250      d
12    254    178    198    218      w
13    252    140    241    217      d
14    353    123    229    144      r
15    849      2     28     30      A
16     12    849     89    162      C
17    849      6      5     24      A
18    849     32     37     89      A
19    216     69     66    849      T
20    355    122    494    192      r
21    153    193    342    162      g
Type: Heterodimer
Binding TFs: TBX21_TF2 (T-box)
SOX6_TF1 / SOX6_TF2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.