DNA Binding Motif

						

			
Accessions: 4ihw_B (3D-footprint 20231221)

			
Names: DNA-binding protein fis
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Fis bound to 27 bp Inosine substituted DNA F28-dI (AAATTTGTTTGAICITTGAGCAAATTT)
Length: 6
Consensus: CanACA
Weblogo: 
PSSM: P0      A      C      G      T
01     11     67      9      9      C
02     57      9     21      9      a
03     24     24     24     24      n
04     76     11      9      0      A
05      0     96      0      0      C
06     96      0      0      0      A
Binding TFs: 4ihw_B (Bacterial regulatory protein, Fis family)
Binding Sites: 4ihw_C
4ihw_D
			
Publications: Hancock S.P, Ghane T, Cascio D, Rohs R, Di Felice R, Johnson R.C. Control of DNA minor groove width and Fis protein binding by the purine 2-amino group. Nucleic acids research 41:6750-60 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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