DNA Binding Motif

						

			
Accessions: NHLH1_methyl_1 (HT-SELEX2 May2017)

			
Names: NHLH1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 18
Consensus: ggGbmkCAGCTGCGyCCc
Weblogo: 
PSSM: P0      A      C      G      T
01     64     77    198    110      g
02    103     23    331     76      g
03     36      6    437     17      G
04     21    125    181    123      b
05    232    211      2     17      m
06     47     61    172    240      k
07      0    449      3      3      C
08    449      0      3      0      A
09      5      0    450     24      G
10     20    433     30      0      C
11      0      0      0    452      T
12      0      0    448      1      G
13     80    390     10     77      C
14     10      0    429     82      G
15     33    214     30    227      y
16     33    413      0     46      C
17     61    339     25     65      C
18    106    225     49     70      c
Binding TFs: NHLH1 (Helix-loop-helix DNA-binding domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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