DNA Binding Motif
| Accessions: | MA0508.2 (JASPAR 2024) |
| Names: | PRDM1 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 10 |
| Consensus: | tcACTTTCwc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 686 573 555 1971 t 02 662 2125 310 688 c 03 3771 2 11 1 A 04 3 3776 1 5 C 05 7 2 25 3751 T 06 14 2 6 3763 T 07 23 5 2 3755 T 08 6 3777 2 0 C 09 1760 697 172 1156 w 10 481 2428 282 594 c |
| Type: | Heterodimer |
| Binding TFs: | O75626 (Zinc finger, C2H2 type, SET domain, Zinc-finger double domain, C2H2-type zinc finger) O75626 |
| Binding Sites: | MA0508.2.1 MA0508.2.10 MA0508.2.11 / MA0508.2.12 MA0508.2.13 MA0508.2.14 MA0508.2.15 MA0508.2.16 / MA0508.2.20 MA0508.2.17 MA0508.2.18 MA0508.2.19 MA0508.2.2 / MA0508.2.7 MA0508.2.3 MA0508.2.4 MA0508.2.5 MA0508.2.6 MA0508.2.8 MA0508.2.9 |
| Publications: | Doody G.M, Care M.A, Burgoyne N.J, Bradford J.R, Bota M, Bonifer C, Westhead D.R, Tooze R.M. An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression. Nucleic acids research 38:5336-50 (2010). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.