DNA Binding Motif
| Accessions: | SOX8_DBD_2 (HumanTF 1.0) |
| Names: | SOX8 |
| Organisms: | Homo sapiens |
| Libraries: | HumanTF 1.0 1 1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] |
| Notes: | Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA |
| Length: | 13 |
| Consensus: | ATGAATTkCAGTC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 7808 372 1921 129 A 02 24 1 15 7808 T 03 17 8 7808 10 G 04 7808 4 12 2 A 05 7808 4 28 11 A 06 5 4 17 7808 T 07 9 4 1033 6775 T 08 704 787 3298 3020 k 09 3 6878 16 930 C 10 7808 7 13 1 A 11 22 6 7808 826 G 12 10 13 25 7808 T 13 2 7808 20 4 C |
| Binding TFs: | SOX8_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Publications: | Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed] |
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