DNA Binding Motif

						

			
Accessions: 1vkx_AB (3D-footprint 20231221)

			
Names: PROTEIN (NF-KAPPA B P65 SUBUNIT)
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE IMMUNOGLOBULIN KB DNA
Length: 11
Consensus: GGAanGTCCCa
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0     96      0      G
03     96      0      0      0      A
04     64     12     10     10      a
05     24     24     24     24      n
06      0      0     96      0      G
07      0      1     21     74      T
08      0     96      0      0      C
09      0     96      0      0      C
10      0     96      0      0      C
11     53     12     10     21      a
Type: Heterodimer
Binding TFs: 1vkx_A (Rel homology domain (RHD))
1vkx_B (Rel homology domain (RHD))
Binding Sites: 1vkx_C
1vkx_D
			
Publications: Chen F.E, Huang D.B, Chen Y.Q, Ghosh G. Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA. Nature 391:410-3 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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