DNA Binding Motif

						

			
Accessions: RARG_3 (HT-SELEX2 May2017)

			
Names: RARG
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: raGGTCAAAAGKTCAm
Weblogo: 
PSSM: P0      A      C      G      T
01   2220    532   1310    714      r
02   3678    650   1097     93      a
03     77      5   4775     94      G
04     16      2   4775   1424      G
05    329    256    501   4775      T
06     25   4775    243    287      C
07   4775      6    247     19      A
08   4775    414    416    753      A
09   4775    157    778    670      A
10   4775    131    837     41      A
11     28      0   4775     12      G
12      3      1   4775   1863      K
13    214    129    392   4775      T
14     40   4775    150    408      C
15   4775      8    258     13      A
16   1505   1501    656   1113      m
Binding TFs: RARG (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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