DNA Binding Motif

						

			
Accessions: ELK1_HOXA3_1 (HumanTF2 1.0)

			
Names: ELK1_HOXA3
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 24
Consensus: aCCGGwAAtkrkwyywcycATTAc
Weblogo: 
PSSM: P0      A      C      G      T
01    525     22    125    123      a
02     66    795    139      9      C
03     94    795     11      4      C
04     12     21    795     21      G
05      0     28    795      0      G
06    453     28      0    342      w
07    663     10     38     84      A
08    655     31     69     39      A
09     26    169     69    531      t
10     76     46    269    403      k
11    227     86    426     56      r
12    138    135    260    263      k
13    356     78    139    222      w
14     60    213     84    439      y
15    142    310     58    285      y
16    429     76     60    230      w
17    132    428    101    135      c
18    180    502    293    336      y
19    369    795    337    170      c
20    795     78    229     58      A
21     32     58     32    795      T
22     73    186     66    795      T
23    795     60     96    199      A
24    194    341    174     86      c
Type: Heterodimer
Binding TFs: ELK1_TF2 (Ets-domain)
ELK1_Full (Ets-domain)
ELK1_TF1 (Ets-domain)
HOXA3_TF1 / HOXA3_TF2 (Homeobox domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.