DNA Binding Motif
| Accessions: | MA1055.3 (JASPAR 2024) |
| Names: | SPL1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | SELEX |
| Length: | 8 |
| Consensus: | tGTACGGA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 422 522 347 2372 t 02 140 43 3426 54 G 03 19 49 19 3576 T 04 3606 30 10 17 A 05 54 3558 11 40 C 06 126 50 3382 105 G 07 227 45 3054 337 G 08 2954 216 77 416 A |
| Type: | Heterodimer |
| Binding TFs: | Q9SMX9 (SBP domain) Q9SMX9 |
| Binding Sites: | MA1055.3.6 MA1055.3.13 / MA1055.3.16 / MA1055.3.7 MA1055.3.9 MA1055.3.15 / MA1055.3.8 MA1055.3.17 / MA1055.3.5 MA1055.3.4 MA1055.3.10 / MA1055.3.14 MA1055.3.1 / MA1055.3.2 MA1055.3.11 / MA1055.3.12 / MA1055.3.19 / MA1055.3.20 MA1055.3.18 MA1055.3.3 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.