DNA Binding Motif

						

			
Accessions: Hoxd13_DBD_2 (HumanTF 1.0)

			
Names: Hoxd13
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4
Length: 11
Consensus: kCTmrTAAAah
Weblogo: 
PSSM: P0      A      C      G      T
01    681    845   1202    971      k
02    413   3699    858     91      C
03    106    574     55   3699      T
04   1702   3699     70    753      m
05   1488      0   2211     26      r
06      0      2      3   3699      T
07   3699     13     28    959      A
08   3699      5      0     83      A
09   3699     14     41    102      A
10   3699    957    423    929      a
11   1038   1298    374    989      h
Binding TFs: Hoxd13_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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