DNA Binding Motif

						

			
Accessions: PB0029.1 (JASPAR 2024)

			
Names: Hic1_1
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: universal protein binding microarray (PBM)
Length: 16
Consensus: dykrTGCCAaCCtrcy
Weblogo: 
PSSM: P0      A      C      G      T
01     28     21     25     26      d
02     14     33     22     32      y
03     15     24     27     34      k
04     66      1     32      2      r
05      0      0      0     99      T
06      4      0     96      0      G
07      0     97      2      0      C
08      0     99      0      0      C
09     92      7      0      1      A
10     58     21     12      9      a
11      1     93      3      4      C
12      3     80      5     12      C
13     20     19     17     44      t
14     40     15     29     15      r
15     20     41     15     24      c
16     24     33     14     28      y
Type: Heterodimer
Binding TFs: Q9R1Y5 (Zinc finger, C2H2 type, BTB/POZ domain, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Q9R1Y5
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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