DNA Binding Motif

						

			
Accessions: 1vto_B (3D-footprint 20231221)

			
Names: TATA BINDING PROTEIN
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: 1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF TATAAAAG
Length: 8
Consensus: TATAAaAg
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03      0      0      0     96      T
04     96      0      0      0      A
05     96      0      0      0      A
06     54     16     13     13      a
07     96      0      0      0      A
08     13     13     57     13      g
Binding TFs: 1vto_B (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1vto_E
1vto_F
			
Publications: Kim J.L, Burley S.K. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nature structural biology 1:638-53 (1994). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.