DNA Binding Motif
| Accessions: | MA1690.2 (JASPAR 2024) |
| Names: | ARF25 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 12 |
| Consensus: | ArcGGGrGACAm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 13488 1748 1955 2249 A 02 9458 2342 6525 1115 r 03 4788 8051 3997 2604 c 04 1286 638 16922 594 G 05 490 134 18723 93 G 06 179 121 19073 67 G 07 7031 261 11973 175 r 08 602 171 18527 140 G 09 18246 140 1021 33 A 10 119 19053 197 71 C 11 18584 96 704 56 A 12 9076 6075 978 3311 m |
| Type: | Heterodimer |
| Binding TFs: | C0PH36 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) C0PH36 |
| Binding Sites: | MA1690.2.1 / MA1690.2.15 / MA1690.2.3 MA1690.2.10 MA1690.2.11 MA1690.2.12 MA1690.2.13 / MA1690.2.18 MA1690.2.14 MA1690.2.16 MA1690.2.17 MA1690.2.19 MA1690.2.2 / MA1690.2.4 MA1690.2.20 MA1690.2.5 MA1690.2.6 MA1690.2.7 MA1690.2.8 MA1690.2.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.