DNA Binding Motif

						

			
Accessions: 6ido_B (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor RpoS,RNA polymerase beta-flap-tip-helix
Organisms: Klebsiella pneumoniae subsp. pneumoniae, strain ATCC 700721 / MGH 78578
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Klebsiella pneumoniae sigma4 of sigmaS fusing with the RNA polymerase beta-flap-tip-helix in complex with -35 element DNA
Length: 6
Consensus: CTtGAC
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0      0      0     96      T
03     19     20     19     38      t
04     19      0     77      0      G
05     96      0      0      0      A
06      0     96      0      0      C
Binding TFs: 6ido_B (Sigma-70, region 4)
Binding Sites: 6ido_E
6ido_F
			
Publications: Lou YC, Chou CC, Yeh HH, Chien CY, Sadotra S, Hsu CH, Chen C. Structural basis for -35 element recognition by σ(4) chimera proteins and their interactions with PmrA response regulator. Proteins 88:69-81 (2020). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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