DNA Binding Motif

Accessions: 6ido_B (3D-footprint 20231221)
Names: RNA polymerase sigma factor RpoS,RNA polymerase beta-flap-tip-helix
Organisms: Klebsiella pneumoniae subsp. pneumoniae, strain ATCC 700721 / MGH 78578
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Klebsiella pneumoniae sigma4 of sigmaS fusing with the RNA polymerase beta-flap-tip-helix in complex with -35 element DNA
Length: 6
Consensus: CTtGAC
Weblogo:
PSSM: P0 A C G T
01 0 96 0 0 C
02 0 0 0 96 T
03 19 20 19 38 t
04 19 0 77 0 G
05 96 0 0 0 A
06 0 96 0 0 C
Binding TFs: 6ido_B (Sigma-70, region 4)
Binding Sites: 6ido_E
6ido_F
Publications: Lou YC, Chou CC, Yeh HH, Chien CY, Sadotra S, Hsu CH, Chen C. Structural basis for -35 element recognition by σ(4) chimera proteins and their interactions with PmrA response regulator. Proteins 88:69-81 (2020). [Pubmed]

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.