DNA Binding Motif

						

			
Accessions: FOXA3_4 (HT-SELEX2 May2017)

			
Names: FOXA3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: ywrwGTmAATATTTrCwyWr
Weblogo: 
PSSM: P0      A      C      G      T
01   2977   6962   2105   8059      y
02   6191    286     37  13618      w
03  12364    605   5895   1240      r
04   8178     92    886  11077      w
05    315     68  19859    139      G
06     31   2675     36  17864      T
07  12458   7637     19     50      m
08  20101     31      0     54      A
09  20096     22     14     92      A
10      5    636     11  19995      T
11  20083      3    183     19      A
12    325     20      7  20090      T
13    129     21     13  20097      T
14    136      3   3268  16773      T
15   9076     61  11027     29      r
16    500  15699    123   3946      C
17   7883   2429    819   8973      w
18    420   6142    254  13474      y
19  13836     33    360   5999      W
20   7502   2232   7122   3247      r
Binding TFs: FOXA3 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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