DNA Binding Motif
| Accessions: | 5hlh_E (3D-footprint 20231221) |
| Names: | MarR family transcriptional regulator |
| Organisms: | Staphylococcus epidermidis, strain ATCC 35984 / RP62A |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of the overoxidized AbfR bound to DNA |
| Length: | 9 |
| Consensus: | gCGATtnAG |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 12 12 60 12 g 02 0 96 0 0 C 03 0 0 96 0 G 04 96 0 0 0 A 05 0 0 0 96 T 06 12 12 12 60 t 07 24 24 24 24 n 08 84 0 0 12 A 09 0 0 96 0 G |
| Binding TFs: | 5hlh_E (MarR family, HxlR-like helix-turn-helix, Sugar-specific transcriptional regulator TrmB, Transcriptional regulator PadR-like family, FeoC like transcriptional regulator, MarR family, Winged helix DNA-binding domain) |
| Binding Sites: | 5hlh_M / 5hlh_N 5hlh_P |
| Publications: | Liu G, Liu X, Xu H, Liu X, Zhou H, Huang Z, Gan J, Chen H, Lan L, Yang CG. Structural Insights into the Redox-Sensing Mechanism of MarR-Type Regulator AbfR. J Am Chem Soc 139:1598-1608 (2017). [Pubmed] |
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