DNA Binding Motif

Accessions: 1c9b_QR (3D-footprint 20231221)
Names: TATA BOX BINDING PROTEIN
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE DOMAIN COMPLEX BOUND TO AN EXTENDED, MODIFIED ADENOVIRAL MAJOR LATE PROMOTER (ADMLP)
Length: 8
Consensus: tATAAaAg
Weblogo:
PSSM: P0 A C G T
01 10 10 13 63 t
02 96 0 0 0 A
03 7 7 8 74 T
04 96 0 0 0 A
05 85 3 3 5 A
06 56 13 13 14 a
07 96 0 0 0 A
08 19 19 38 20 g
Binding TFs: 1c9b_R (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1c9b_S
1c9b_T
Publications: Tsai F.T, Sigler P.B. Structural basis of preinitiation complex assembly on human pol II promoters. The EMBO journal 19:25-36 (2000). [Pubmed]

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