DNA Binding Motif

						

			
Accessions: 1b3t_A (3D-footprint 20231221)

			
Names: PROTEIN (NUCLEAR PROTEIN EBNA1)
Organisms: Epstein-Barr virus (strain B95-8) (HHV-4), Human herpesvirus 4
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
Length: 7
Consensus: GCTTCCC
Weblogo: 
PSSM: P0      A      C      G      T
01     16      7     66      7      G
02      7     66     14      9      C
03      7      0      8     81      T
04      0      0      0     96      T
05      0     96      0      0      C
06      0     96      0      0      C
07      9     73      7      7      C
Binding TFs: 1b3t_A (Epstein Barr virus nuclear antigen-1, DNA-binding domain)
Binding Sites: 1b3t_C / 1b3t_D
			
Publications: Bochkarev A, Bochkareva E, Frappier L, Edwards A.M. The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1. Journal of molecular biology 284:1273-8 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.