DNA Binding Motif

						

			
Accessions: MA1674.1 (JASPAR 2024)

			
Names: NAC017
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 24
Consensus: wdgTTwCTTGttsmaCAAGwAAhh
Weblogo: 
PSSM: P0      A      C      G      T
01    502    268    243    450      w
02    438    189    435    401      d
03    332    212    582    337      g
04    117     16     11   1319      T
05    201      7    112   1143      T
06    658    232    157    416      w
07      3   1454      0      6      C
08      0      0    158   1305      T
09      0      2      0   1461      T
10     19     39   1398      7      G
11    215    273    226    749      t
12    323    225    363    552      t
13    341    399    389    334      s
14    554    378    211    320      m
15    756    206    274    227      a
16      9   1397     42     15      C
17   1460      1      2      0      A
18   1292    171      0      0      A
19      4      0   1454      5      G
20    393    167    239    664      w
21   1131    124      9    199      A
22   1302     17     18    126      A
23    399    419    247    398      h
24    419    429    199    416      h
Type: Heterodimer
Binding TFs: Q9XIC5 (No apical meristem (NAM) protein)
Q9XIC5
Binding Sites: MA1674.1.1
MA1674.1.5
MA1674.1.6
MA1674.1.7
MA1674.1.8
MA1674.1.2
MA1674.1.3
MA1674.1.4
MA1674.1.10
MA1674.1.11
MA1674.1.12
MA1674.1.13
MA1674.1.14
MA1674.1.15
MA1674.1.16
MA1674.1.17
MA1674.1.18
MA1674.1.19
MA1674.1.20
MA1674.1.9
			
Publications: Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E. A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis. Plant Cell 25:3450-71 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.