DNA Binding Motif

						

			
Accessions: UN0409.1 (JASPAR 2024)

			
Names: RKD2
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: gyGaCkyTTCrtCTTCCyy
Weblogo: 
PSSM: P0      A      C      G      T
01    247 209.54    351    193      g
02    206    286    124    383      y
03    184  1.704    797 17.036      G
04    610    135 64.736    191      a
05      0    995      0  5.111      C
06  3.407    194    453    349      k
07    129    264    201    405      y
08 15.332 17.036      0    968      T
09 15.332 51.107      0 933.56      T
10 22.147    763    148  66.44      C
11    528 68.143    397  6.814      r
12    240    111    244    405      t
13    181    687 30.664    102      C
14      0      0 15.332    985      T
15 69.847    165 15.332    750      T
16 18.739  952.3  8.518 20.443      C
17 20.443    726  6.814    247      C
18    157    370  90.29    383      y
19    227    358    155    261      y
Type: Heterodimer
Binding TFs: Q9CA66 (RWP-RK domain)
Q9CA66
			
	
			


			

				

				
				
				
				

			

			

		

	
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