DNA Binding Motif

						

			
Accessions: 4s04_EF (3D-footprint 20231221)

			
Names: DNA-binding transcriptional regulator BasR
Organisms: Klebsiella pneumoniae JM45
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Klebsiella pneumoniae PmrA in complex with PmrA box DNA
Length: 18
Consensus: TWAtnTTannnTAAGnAA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     26      1      0     69      W
03     96      0      0      0      A
04     11     17     13     55      t
05     24     24     24     24      n
06      7      4     13     72      T
07     14      9      1     72      T
08     55     17     11     13      a
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      0      2      0     94      T
13     96      0      0      0      A
14     96      0      0      0      A
15      1      2     92      1      G
16     24     24     24     24      n
17     96      0      0      0      A
18     96      0      0      0      A
Binding TFs: 4s04_E / 4s04_F (Response regulator receiver domain, Transcriptional regulatory protein, C terminal)
Binding Sites: 4s04_G
4s04_H
			
Publications: Lou YC, Weng TH, Li YC, Kao YF, Lin WF, Peng HL, Chou SH, Hsiao CD, Chen C. Structure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA. Nat Commun : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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