DNA Binding Motif

						

			
Accessions: UP00523A_2 (UniPROBE 20160601)

			
Names: FoxN5, FOXR1
Organisms: Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: cmymvykArGACGCCAavwgasg
Weblogo: 
PSSM: P0      A      C      G      T
01   0.23   0.40   0.15   0.21      c
02   0.34   0.42   0.13   0.12      m
03   0.13   0.37   0.20   0.30      y
04   0.41   0.39   0.09   0.10      m
05   0.27   0.29   0.29   0.15      v
06   0.13   0.30   0.22   0.35      y
07   0.24   0.09   0.25   0.42      k
08   0.72   0.06   0.17   0.04      A
09   0.30   0.06   0.53   0.11      r
10   0.11   0.07   0.82      0      G
11   0.97   0.01   0.01   0.01      A
12   0.03   0.94      0   0.02      C
13   0.01   0.01   0.98      0      G
14   0.01   0.98   0.01      0      C
15   0.01   0.82   0.03   0.14      C
16   0.79   0.01   0.18   0.01      A
17   0.54   0.09   0.22   0.14      a
18   0.32   0.28   0.28   0.12      v
19   0.35   0.10   0.18   0.37      w
20   0.21   0.23   0.36   0.20      g
21   0.54   0.19   0.13   0.14      a
22   0.19   0.48   0.27   0.05      s
23   0.23   0.13   0.49   0.14      g
Binding TFs: UP00523A (Fork head domain)
Binding Sites: AACAAACA
ACAAACAA
ATTGTTTG
CAAACAAA
CAAACAAC
GCAAACAA
AAGTTTGC
ACAAACAC
ACAAACAG
AGCAAACA
AGGCAAAC
AGTGTTTG
ATCAAACA
ATGTTTGC
CACAAACA
CGCAAACA
GACAAACA
GGCAAACA
GTCAAACA
TCAAACAA
			
Publications: Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML. DNA-binding specificity changes in the evolution of forkhead transcription factors. Proc Natl Acad Sci U S A 110:12349-54 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.