DNA Binding Motif
| Accessions: | MA0062.3 (JASPAR 2024) |
| Names: | GABPA |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 14 |
| Consensus: | yycACTTCCTGtyy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 15887 16922 15945 16725 y 02 10981 21679 13751 19068 y 03 7639 41398 6989 9453 c 04 52260 3988 4873 4358 A 05 929 55664 2169 6717 C 06 3885 1443 965 59186 T 07 862 1230 1633 61754 T 08 1398 61373 1150 1558 C 09 993 63107 520 859 C 10 1722 1542 4561 57654 T 11 2219 6328 51920 5012 G 12 5344 12006 7720 40409 t 13 11903 18154 15081 20341 y 14 13522 17382 13187 21388 y |
| Type: | Heterodimer |
| Binding TFs: | Q06546 (Ets-domain, Sterile alpha motif (SAM)/Pointed domain, GA-binding protein alpha chain) Q06546 |
| Binding Sites: | MA0062.3.1 MA0062.3.10 / MA0062.3.6 MA0062.3.11 / MA0062.3.7 MA0062.3.12 MA0062.3.13 / MA0062.3.8 MA0062.3.14 / MA0062.3.9 MA0062.3.10 / MA0062.3.15 MA0062.3.11 / MA0062.3.16 MA0062.3.12 / MA0062.3.17 MA0062.3.18 MA0062.3.19 MA0062.3.2 MA0062.3.20 MA0062.3.3 MA0062.3.4 MA0062.3.5 MA0062.3.6 MA0062.3.4 / MA0062.3.7 MA0062.3.5 / MA0062.3.8 MA0062.3.9 MA0062.3.1 MA0062.3.13 MA0062.3.14 MA0062.3.15 MA0062.3.16 MA0062.3.17 MA0062.3.18 MA0062.3.19 MA0062.3.20 |
| Publications: | Batchelor A.H, Piper D.E, de la Brousse F.C, McKnight S.L, Wolberger C. The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA. Science (New York, N.Y.) 279:1037-41 (1998). [Pubmed] |
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