DNA Binding Motif

						

			
Accessions: MA1647.3 (JASPAR 2024)

			
Names: Prdm4
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 11
Consensus: cCTtGAAACyg
Weblogo: 
PSSM: P0      A      C      G      T
01    220    745     76    140      c
02     33   1098     14     36      C
03     21     40     13   1107      T
04    202     37    203    739      t
05     30      4   1141      6      G
06   1155     12      7      7      A
07   1140     10     27      4      A
08   1161      6      9      5      A
09     16   1147      8     10      C
10    223    434     39    485      y
11    170    184    715    112      g
Type: Heterodimer
Binding TFs: Q80V63 (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Q80V63
Binding Sites: MA1647.3.1
MA1647.3.10
MA1647.3.11
MA1647.3.12
MA1647.3.13 / MA1647.3.17
MA1647.3.14
MA1647.3.15
MA1647.3.16 / MA1647.3.18
MA1647.3.19
MA1647.3.2
MA1647.3.20
MA1647.3.3
MA1647.3.4
MA1647.3.5
MA1647.3.6
MA1647.3.7
MA1647.3.8
MA1647.3.9
			
Publications: Bogani D, Morgan MA, Nelson AC, Costello I, McGouran JF, Kessler BM, Robertson EJ, Bikoff EK. The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo. Mol Cell Biol 33:3936-50 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.