DNA Binding Motif

						

			
Accessions: 6j9a_A (3D-footprint 20231221)

			
Names: B3 domain-containing transcription repressor VAL1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of Arabidopsis thaliana VAL1 in complex with FLC DNA fragment
Length: 6
Consensus: CATGCa
Weblogo: 
PSSM: P0      A      C      G      T
01      7     81      4      4      C
02     85      3      3      5      A
03      8      7      7     74      T
04      0      0     96      0      G
05      2     88      2      4      C
06     42     18     18     18      a
Binding TFs: 6j9a_A (B3 DNA binding domain)
Binding Sites: 6j9a_B
6j9a_C
			
Publications: Tao Z, Hu H, Luo X, Jia B, Du J, He Y. Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat Plants 5:424-435 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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