DNA Binding Motif

						

			
Accessions: M0261 (AthalianaCistrome v4_May2016)

			
Names: OBP4.ampDAP, T25961;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 19
Consensus: waaaaacAAAAAGtwaaww
Weblogo: 
PSSM: P0      A      C      G      T
01    283     64     81    172      w
02    256     79    127    138      a
03    298     70     94    138      a
04    328     75    111     86      a
05    243     88    146    123      a
06    221    119    137    123      a
07    145    203    143    109      c
08    527      6     31     36      A
09    483      0      0    117      A
10    600      0      0      0      A
11    600      0      0      0      A
12    583      0     17      0      A
13      0      0    600      0      G
14     54     84    135    327      t
15    263     37     88    212      w
16    344     42    130     84      a
17    331    106     63    100      a
18    274     71     72    183      w
19    273     68     88    171      w
Binding TFs: T25961 (Dof domain, zinc finger)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.