DNA Binding Motif

						

			
Accessions: PDX1_methyl_2 (HT-SELEX2 May2017)

			
Names: PDX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 8
Consensus: rTCrTTAr
Weblogo: 
PSSM: P0      A      C      G      T
01   2653   1494   2960    211      r
02    420    313    274   5613      T
03    406   5613    233    364      C
04  11879    102   5613      0      r
05    103    354     44   5613      T
06    322      0     76   5613      T
07   5613     35      0      0      A
08   2145    672   1808    988      r
Binding TFs: PDX1 (Homeobox domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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