DNA Binding Motif

						

			
Accessions: M0414 (AthalianaCistrome v4_May2016)

			
Names: ATHB21.ampDAP, T09116;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 20
Consensus: wmAcCAATwATTgrwwhwww
Weblogo: 
PSSM: P0      A      C      G      T
01    228     86    123    163      w
02    181    206     99    114      m
03    413     37     57     93      A
04    119    314     29    138      c
05      9    556      0     35      C
06    599      1      0      0      A
07    600      0      0      0      A
08      0      0      0    600      T
09    282     28      9    281      w
10    599      1      0      0      A
11      0      1      0    599      T
12     72      4     31    493      T
13    136     20    300    144      g
14    198     83    177    142      r
15    210    124     87    179      w
16    168    145    110    177      w
17    197    166     70    167      h
18    206    112     60    222      w
19    210     79     56    255      w
20    259     49     38    254      w
Binding TFs: T09116 (Homeobox domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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