DNA Binding Motif

						

			
Accessions: HOXB2_SOX15_2 (HumanTF2 1.0)

			
Names: HOXB2_SOX15
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 17
Consensus: ACAAwrsravsymATtA
Weblogo: 
PSSM: P0      A      C      G      T
01    367     18     17     18      A
02      0    367      1     51      C
03    367     15     27     19      A
04    367      7     10     11      A
05    116      5     10    251      w
06    145     27    222     36      r
07    104    153    214     41      s
08    112     89    104     62      r
09    135     88     62     82      a
10     94    115     92     66      v
11     75    115    120     56      s
12     52    207     59    160      y
13    240    127     78     32      m
14    367     37     34      0      A
15      0     11      8    367      T
16     56    127     38    367      t
17    367      4     58     51      A
Type: Heterodimer
Binding TFs: HOXB2_TF1 (Homeobox domain)
SOX15_TF2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.