DNA Binding Motif

						

			
Accessions: 1run_B (3D-footprint 20231221)

			
Names: PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP))
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Length: 6
Consensus: ATcaCA
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0      0      0     96      T
03     13     54     13     16      c
04     54     16     13     13      a
05      0     96      0      0      C
06     96      0      0      0      A
Binding TFs: 1run_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 1run_D
1run_E
			
Publications: Parkinson G, Gunasekera A, Vojtechovsky J, Zhang X, Kunkel T.A, Berman H, Ebright R.H. Aromatic hydrogen bond in sequence-specific protein DNA recognition. Nature structural biology 3:837-41 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.