DNA Binding Motif

						

			
Accessions: HOXD12_FIGLA (HumanTF2 1.0)

			
Names: HOXD12_FIGLA
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 19
Consensus: gymrTwAaaakmCAssTGk
Weblogo: 
PSSM: P0      A      C      G      T
01    136     97    341     38      g
02     46    184     19    254      y
03    213    224     79     97      m
04    210     44    228     35      r
05      0      0      0    438      T
06    438     57     21    294      w
07    438     22      9     51      A
08    438     91     40     91      a
09    209     49     73    107      a
10    137    106    109     86      a
11    108     93    127    110      k
12    119    134     86     99      m
13      7    438     25      4      C
14    438      0     30      3      A
15      3    183    255      0      s
16     16    238    199     16      s
17      0     17      0    438      T
18      1      0    438      0      G
19     58     53    193    134      k
Type: Heterodimer
Binding TFs: FIGLA_TF2 (Helix-loop-helix DNA-binding domain)
HOXD12_TF1 (Homeobox domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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