DNA Binding Motif

						

			
Accessions: UN0464.1 (JASPAR 2024)

			
Names: Pax6
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wrwttrrTTAATTrrkywww
Weblogo: 
PSSM: P0      A      C      G      T
01    292    174    236    298      w
02    314    184    254    248      r
03    257    235    202    307      w
04    222    239    220    318      t
05    238    216    231    315      t
06    335    221    279    164      r
07    375    191    255    179      r
08     70    108     82    741      T
09     33     57     26    884      T
10    873     51     57     20      A
11    923     23     30     24      A
12     48     27     29    896      T
13     35     66     88    811      T
14    387    158    271    185      r
15    315    208    321    156      r
16    235    220    277    267      k
17    181    291    213    315      y
18    286    209    223    282      w
19    325    182    211    282      w
20    286    198    235    281      w
Type: Heterodimer
Binding TFs: Q4H2Y8 (Homeobox domain, 'Paired box' domain)
Q4H2Y8
			
	
			


			

				

				
				
				
				

			

			

		

	
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