DNA Binding Motif

						

			
Accessions: 1srs_AB (3D-footprint 20231221)

			
Names: PROTEIN (SERUM RESPONSE FACTOR (SRF))
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA
Length: 10
Consensus: CCTAatTAGk
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0     96      0      0      C
03      4      1      1     90      T
04     90      1      1      4      A
05     50     18     19      9      a
06     20     13     13     50      t
07      0      0      0     96      T
08     91      1      3      1      A
09      1      1     92      2      G
10      1      4     64     27      k
Type: Heterodimer
Binding TFs: 1srs_A (SRF-type transcription factor (DNA-binding and dimerisation domain))
1srs_B (SRF-type transcription factor (DNA-binding and dimerisation domain))
Binding Sites: 1srs_C
1srs_W
			
Publications: Pellegrini L., Tan S., Richmond T. J. Structure of serum response factor core bound to DNA. Nature 376:490-498 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.