DNA Binding Motif
| Accessions: | MA1165.2 (JASPAR 2024) |
| Names: | HHO6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 14 |
| Consensus: | whaaAGATTCtkww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 2662 2443 1581 3909 w 02 2870 2659 1573 3493 h 03 4865 1624 1608 2498 a 04 5692 1493 1372 2038 a 05 10221 76 107 191 A 06 19 32 10366 178 G 07 10410 52 58 75 A 08 435 16 17 10127 T 09 332 71 105 10087 T 10 50 10484 21 40 C 11 1638 1723 865 6369 t 12 2496 1775 3352 2972 k 13 3235 2118 1768 3474 w 14 3441 1763 1741 3650 w |
| Type: | Heterodimer |
| Binding TFs: | Q9FX84 (Myb-like DNA-binding domain) Q9FX84 |
| Binding Sites: | MA1165.2.1 MA1165.2.10 MA1165.2.11 MA1165.2.12 MA1165.2.13 MA1165.2.14 MA1165.2.15 MA1165.2.16 MA1165.2.17 MA1165.2.18 MA1165.2.19 MA1165.2.2 MA1165.2.20 MA1165.2.3 MA1165.2.4 MA1165.2.5 MA1165.2.6 MA1165.2.7 MA1165.2.8 MA1165.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.