DNA Binding Motif

						

			
Accessions: MA0878.3 (JASPAR 2024)

			
Names: CDX1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: CAP-SELEX
Length: 10
Consensus: GGymATAAAA
Weblogo: 
PSSM: P0      A      C      G      T
01   1088    884   7528   1076      G
02    527    355   8090    131      G
03     11   4868      0   3749      y
04   4822   3795      0    355      m
05   8617      0    344      0      A
06      0      0      0   8617      T
07   8617     56      0    230      A
08   8617     72     97     29      A
09   8617      0      0      0      A
10   7199   1418    754    854      A
Type: Heterodimer
Binding TFs: P47902 (Homeobox domain, Caudal like protein activation region)
P47902
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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