DNA Binding Motif
| Accessions: | NR1I3_2 (HT-SELEX2 May2017), MA1534.1 (JASPAR 2024) |
| Names: | NR1I3 |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1, JASPAR 2024 2 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | HT-SELEX |
| Length: | 9 |
| Consensus: | rTGAACTtt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 23587 4558 13053 7226 r 02 162 11168 0 48424 T 03 6626 100 48424 0 G 04 48424 2613 342 791 A 05 48424 2972 0 0 A 06 0 48424 0 0 C 07 0 1870 0 48424 T 08 14101 15443 3267 34323 t 09 11057 8163 4479 37367 t |
| Type: | Heterodimer |
| Binding TFs: | Q14994 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains)) NR1I3 (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains)) Q14994 |
| Publications: | Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] Frank C, Gonzalez MM, Oinonen C, Dunlop TW, Carlberg C. Characterization of DNA complexes formed by the nuclear receptor constitutive androstane receptor. J Biol Chem 278:43299-310 (2003). [Pubmed] |
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