DNA Binding Motif

						

			
Accessions: SRF_methyl_1 (HT-SELEX2 May2017)

			
Names: SRF
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 10
Consensus: CCaTgTAtGG
Weblogo: 
PSSM: P0      A      C      G      T
01     21   3121      0      0      C
02      0   3121     13      0      C
03   2279      0    250    842      a
04    127     15      0   3121      T
05    974    390   3121    604      g
06      1     15      0   3121      T
07   2823      0      5    298      A
08    646    717    392   1365      t
09     27      0   3121      0      G
10      2      0   3121    166      G
Binding TFs: SRF (SRF-type transcription factor (DNA-binding and dimerisation domain))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.