DNA Binding Motif
| Accessions: | MA1398.2 (JASPAR 2024) |
| Names: | KUA1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 11 |
| Consensus: | wyCTTATCCaw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 873 194 273 477 w 02 328 600 211 678 y 03 69 1567 112 69 C 04 127 61 18 1611 T 05 107 40 41 1629 T 06 1751 29 11 26 A 07 14 14 9 1780 T 08 15 1771 17 14 C 09 35 1502 27 253 C 10 943 102 335 437 a 11 633 377 174 633 w |
| Type: | Heterodimer |
| Binding TFs: | Q9LVS0 (Myb-like DNA-binding domain) Q9LVS0 |
| Binding Sites: | MA1398.2.1 MA1398.2.10 / MA1398.2.5 MA1398.2.11 / MA1398.2.6 MA1398.2.12 / MA1398.2.7 MA1398.2.13 MA1398.2.14 / MA1398.2.8 MA1398.2.15 / MA1398.2.9 MA1398.2.10 / MA1398.2.16 MA1398.2.11 / MA1398.2.17 MA1398.2.18 MA1398.2.12 / MA1398.2.19 MA1398.2.2 MA1398.2.20 MA1398.2.3 MA1398.2.2 / MA1398.2.4 MA1398.2.5 MA1398.2.3 / MA1398.2.6 MA1398.2.7 MA1398.2.8 MA1398.2.9 MA1398.2.13 MA1398.2.14 MA1398.2.15 MA1398.2.16 MA1398.2.17 MA1398.2.18 MA1398.2.19 MA1398.2.20 MA1398.2.4 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.