DNA Binding Motif

Accessions: Sox1_DBD_4 (HumanTF 1.0)
Names: Sox1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 14
Consensus: TGAATrrhyATTCA
Weblogo:
PSSM: P0 A C G T
01 0 8 11 417 T
02 0 0 417 0 G
03 417 0 0 0 A
04 417 9 0 0 A
05 0 27 0 417 T
06 190 5 122 100 r
07 129 55 140 93 r
08 112 115 43 146 h
09 85 182 0 158 y
10 417 0 14 0 A
11 0 0 14 417 T
12 0 0 12 417 T
13 0 417 0 0 C
14 417 11 0 0 A
Binding TFs: Sox1_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

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