DNA Binding Motif

						

			
Accessions: Sox1_DBD_4 (HumanTF 1.0)

			
Names: Sox1
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4; Possible binding to single stranded DNA
Length: 14
Consensus: TGAATrrhyATTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      8     11    417      T
02      0      0    417      0      G
03    417      0      0      0      A
04    417      9      0      0      A
05      0     27      0    417      T
06    190      5    122    100      r
07    129     55    140     93      r
08    112    115     43    146      h
09     85    182      0    158      y
10    417      0     14      0      A
11      0      0     14    417      T
12      0      0     12    417      T
13      0    417      0      0      C
14    417     11      0      0      A
Binding TFs: Sox1_DBD (HMG (high mobility group) box, Domain of unknown function (DUF1898), SOX transcription factor)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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