DNA Binding Motif

						

			
Accessions: MA1866.1 (JASPAR 2024)

			
Names: FoxI-a
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: aaaamahAAACAAammmmmm
Weblogo: 
PSSM: P0      A      C      G      T
01    349    245    163    244      a
02    443    197    133    228      a
03    522    163     80    235      a
04    508    226    104    162      a
05    410    276     76    238      m
06    568    194    166     72      a
07    333    326     46    296      h
08    824    121      6     49      A
09    847     95      8     50      A
10    951     20     12     17      A
11     16    926      6     52      C
12    954     20     10     16      A
13    763    102     47     88      A
14    484    231     81    204      a
15    347    375    116    163      m
16    464    251    124    160      m
17    375    294    140    191      m
18    363    286    139    212      m
19    349    289    157    206      m
20    321    302    162    216      m
Type: Heterodimer
Binding TFs: Q4H3I6 (Fork head domain)
Q4H3I6
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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