DNA Binding Motif

						

			
Accessions: 3ugo_A (3D-footprint 20231221)

			
Names: RNA polymerase sigma factor
Organisms: Thermus aquaticus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of RNA-polymerase sigma subunit domain 2 complexed with -10 promoter element ssDNA oligo (TACAAT)
Length: 7
Consensus: gTAnAAT
Weblogo: 
PSSM: P0      A      C      G      T
01     14     14     52     16      g
02      0      0      0     96      T
03     96      0      0      0      A
04     24     24     24     24      n
05     67      9     11      9      A
06     96      0      0      0      A
07      0      0      0     96      T
Binding TFs: 3ugo_A (Sigma-70 factor, region 1.2, Sigma-70 region 2 )
			
Publications: Feklistov A, Darst SA. Structural basis for promoter-10 element recognition by the bacterial RNA polymerase σ subunit. Cell 147:1257-69 (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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