DNA Binding Motif
| Accessions: | UP00373A_1 (UniPROBE 20160601) |
| Names: | MXL-1 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | awwAarAAACAwws |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.46 0.09 0.22 0.23 a 02 0.47 0.13 0.12 0.29 w 03 0.35 0.10 0.17 0.38 w 04 0.78 0.03 0.09 0.09 A 05 0.67 0.13 0.11 0.10 a 06 0.26 0.21 0.47 0.06 r 07 0.72 0.04 0.07 0.16 A 08 0.72 0.08 0.09 0.11 A 09 0.72 0.03 0.15 0.10 A 10 0.13 0.69 0.06 0.13 C 11 0.75 0.11 0.05 0.08 A 12 0.30 0.09 0.13 0.48 w 13 0.33 0.06 0.16 0.45 w 14 0.19 0.38 0.26 0.17 s |
| Binding TFs: | UP00373A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACGTG ACACGTGC ACACGTGG ACCACGTG AGCACGTG ATCACGTG CACGTGAC CACGTGCA CACGTGCC CACGTGCG CACGTGGA CACGTGGC CACGTGGG CACGTGTC CCACGTGA CCACGTGC CCACGTGG GCACGTGA GCACGTGC TCACGTGA |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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