DNA Binding Motif

						

			
Accessions: AGL15 (Athamap 20091028)

			
Names: AGL15
Organisms: Arabidopsis thaliana
Libraries: Athamap 20091028 1
1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009).  [Pubmed]
Length: 16
Consensus: tTwCywwwwwwrGwAa
Weblogo: 
PSSM: P0      A      C      G      T
01      5      4      3     20      t
02      4      2      1     25      T
03     16      2      4     10      w
04      0     32      0      0      C
05      1     15      0     16      y
06     17      4      1     10      w
07     10      3      2     17      w
08     17      0      1     14      w
09     13      0      0     19      w
10     19      1      2     10      w
11      8      1      4     19      w
12     19      0     12      1      r
13      0      0     31      1      G
14      9      5      4     14      w
15     26      1      1      4      A
16     19      3      4      6      a
Binding TFs: AGL15 (SRF-type transcription factor (DNA-binding and dimerisation domain), K-box region)
			
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.