DNA Binding Motif

						

			
Accessions: FOXA3_methyl_1 (HT-SELEX2 May2017)

			
Names: FOXA3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: csyTAwGTAAACAAws
Weblogo: 
PSSM: P0      A      C      G      T
01    106   1165    289    180      c
02    417    904    596     71      s
03     45    647     48   1085      y
04    203     30      8   1644      T
05   1658     24    421      7      A
06   1214     63     75    527      w
07     65     16   1735      0      G
08      8    151      3   1728      T
09   1735    129      6      0      A
10   1740     28      0      6      A
11   1739      0     26      0      A
12      0   1686      1    192      C
13   1711      0     49      0      A
14   1644     89     53    345      A
15   1514    201    153    629      w
16    156    805    478    300      s
Binding TFs: FOXA3 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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