DNA Binding Motif
| Accessions: | MA1233.2 (JASPAR 2024) |
| Names: | ERF021 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 15 |
| Consensus: | ycgcCrCCGACAmmr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 723 1062 509 865 y 02 777 1231 362 789 c 03 756 363 1265 775 g 04 424 1691 388 656 c 05 186 2340 102 531 C 06 889 15 2078 177 r 07 38 3024 76 21 C 08 19 3113 14 13 C 09 56 8 3076 19 G 10 2213 500 104 342 A 11 27 3048 44 40 C 12 2867 54 158 80 A 13 1271 837 299 752 m 14 1020 831 545 763 m 15 1024 461 885 789 r |
| Type: | Heterodimer |
| Binding TFs: | Q9C9I2 (AP2 domain) Q9C9I2 |
| Binding Sites: | MA1233.2.1 MA1233.2.10 MA1233.2.11 MA1233.2.12 MA1233.2.13 MA1233.2.14 MA1233.2.15 MA1233.2.16 MA1233.2.17 MA1233.2.18 MA1233.2.19 MA1233.2.2 MA1233.2.20 MA1233.2.3 MA1233.2.4 MA1233.2.5 MA1233.2.6 MA1233.2.7 MA1233.2.8 MA1233.2.9 |
| Publications: | Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.