DNA Binding Motif
| Accessions: | 3qoq_ABCD (3D-footprint 20231221) |
| Names: | Alginate and motility regulator Z |
| Organisms: | Pseudomonas aeruginosa, strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal Structure of the Transcription Factor AmrZ in Complex with the 18 Base Pair amrZ1 Binding Site |
| Length: | 13 |
| Consensus: | TtGGCAnnaCGCC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0 0 0 96 T 02 19 19 20 38 t 03 0 0 96 0 G 04 0 0 96 0 G 05 0 96 0 0 C 06 96 0 0 0 A 07 24 24 24 24 n 08 24 24 24 24 n 09 48 19 10 19 a 10 0 86 0 10 C 11 0 0 96 0 G 12 0 96 0 0 C 13 0 96 0 0 C |
| Type: | Heterodimer |
| Binding TFs: | 3qoq_A (Arc-like DNA binding domain) 3qoq_B (Arc-like DNA binding domain) 3qoq_C (Arc-like DNA binding domain) 3qoq_D (Arc-like DNA binding domain) |
| Binding Sites: | 3qoq_E 3qoq_F |
| Publications: | Pryor E.E, Waligora E.A, Xu B, Dellos-Nolan S, Wozniak D.J, Hollis T. The transcription factor AmrZ utilizes multiple DNA binding modes to recognize activator and repressor sequences of Pseudomonas aeruginosa virulence genes. PLoS pathogens 8:e1002648 (2012). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.