DNA Binding Motif

Accessions: 3qoq_ABCD (3D-footprint 20231221)
Names: Alginate and motility regulator Z
Organisms: Pseudomonas aeruginosa, strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of the Transcription Factor AmrZ in Complex with the 18 Base Pair amrZ1 Binding Site
Length: 13
Consensus: TtGGCAnnaCGCC
Weblogo:
PSSM: P0 A C G T
01 0 0 0 96 T
02 19 19 20 38 t
03 0 0 96 0 G
04 0 0 96 0 G
05 0 96 0 0 C
06 96 0 0 0 A
07 24 24 24 24 n
08 24 24 24 24 n
09 48 19 10 19 a
10 0 86 0 10 C
11 0 0 96 0 G
12 0 96 0 0 C
13 0 96 0 0 C
Type: Heterodimer
Binding TFs: 3qoq_A (Arc-like DNA binding domain)
3qoq_B (Arc-like DNA binding domain)
3qoq_C (Arc-like DNA binding domain)
3qoq_D (Arc-like DNA binding domain)
Binding Sites: 3qoq_E
3qoq_F
Publications: Pryor E.E, Waligora E.A, Xu B, Dellos-Nolan S, Wozniak D.J, Hollis T. The transcription factor AmrZ utilizes multiple DNA binding modes to recognize activator and repressor sequences of Pseudomonas aeruginosa virulence genes. PLoS pathogens 8:e1002648 (2012). [Pubmed]

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